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Published: January 31, 2011

Darwin and museum collections

John Bates, Curator and Section Head, Life Sciences, Negaunee Integrative Research Center

We study the evolution of birds, so when we go into our son’s seventh grade science classroom and they are going to be studying biological diversity, but the word “evolution” does not appear in the room because the word is not an accepted term in the state curriculum standards, we realize there is still a lot of work to be done to get us beyond debates over evolution even in a state like Illinois.  To us, evolution is the fundamental basis of biology, but it is also a fun thing to think about.

Hackett, S. J. and J. M Bates.  2009. Darwin and Evolution, Inextricably Linked with Natural History Collections.  On-line essay for the OneBookOne Program, Northwestern University. 

Darwin and Evolution, inextricably linked with

Natural History Collections

We study the evolution of birds, so when we go into our son’s seventh grade science classroom and they are going to be studying biological diversity, but the word “evolution” does not appear in the room because the word is not an accepted term in the state curriculum standards, we realize there is still a lot of work to be done to get us beyond debates over evolution even in a state like Illinois.  To us, evolution is the fundamental basis of biology, but it is also a fun thing to think about.  It is simply wondrous to consider what this word tells us about the complexity of the natural world.  Although, it is perceived as a challenge to God for many people, we enjoy what it explains to us about life on earth, where that life came from, and with appropriate caveats, what could happen to life in the future.  But where should one go to learn about evolution?

                  With all due respect to university departments, we believe that natural history museums are the primary cradles for evolutionary research.  True, most people see “dead birds” when they take a tour of the collections that we are privileged to curate at The Field Museum, but in any collection tray we pull out, we see the products of the evolutionary process.  Collections were essential to Darwin.  What he saw in nature could often be examined in more and clearer detail with collections because they documented the variation existing in the natural world.  Darwin made and published on collections of all kinds throughout his life.  From beetles and barnacles of England to South American birds and fossils collected during his voyage with the Beagle, Darwin gained insight from collections that crystallized his thoughts leading to the theory of natural selection.  Through collections, he could see that variation could be related to the age and sex of individuals or it could be related to the time of year they were collected, or it could be related to the population from which they came and ultimately from different natural selection regimes across geography.

                  As time passes, specimens in natural history collections are becoming even more valuable because these collections come to represent what was and this can be contrasted with what is in the present (and will be in the future).  In the 300 years or so that natural history collections now document, we can look for change and the results are intriguing. Recently, scientists from the University of California’s Museum of Vertebrate Zoology have resampled the collecting sites of the great naturalist and curator Joseph Grinnell and his colleagues in the mountains of California (Mortiz et al. 2008) and can document changes in the distributions of small mammals and other animals that are consistent with the effects of climate change.  In another example, Pergams et al. (2003) documented shifts in gene frequencies on a local scale in Peromyscus mice in northern Illinois using series from museum collections and modern sampling. While, such shifts could represent ecological change, rather than evolutionary change, it is like having a nearly complete fossil record for the period in question, and one can look for evolutionarily significant responses as well.  Thus, we can study how idiosyncratic evolution is, or the reverse, how often patterns are shared in different lineages.  Through natural history collections, we can study the affects of humans on rates and directions of evolutionary change in other plants and animals.

Darwin was one of the first to popularize the use of collections for their scientific value.  In the Victorian age, collections were still largely viewed as closets of curiosities, but Darwin saw more.  He saw patterns that he realized had to be generated by forces in nature.  Today, in modern natural history museums like ours, detailed information is collected with every specimen.  Collections are studied in our labs and specimens are loaned for study to scientists around the world as never before.  We can generate DNA sequence data from tissue samples, we can take detailed spectrophotometric readings on color variation or analyze the isotopic composition of feathers to study all kinds of questions associated with the evolution and ecology of our study organisms. 

It is unproductive to speculate too much about what Darwin would have thought of this or that in regards to modern science, but from his writings, we think it is fair to say that he would be highly satisfied that so much of what he wrote, that was the result of so much detailed study of collections, is accepted by scientists today.  At the same time, he would not be surprised that we still have so much to learn about the details and complexities of evolution.  He put it best at the end of On the Origin of Species:  “…from so simple a beginning endless forms beautiful and most wonderful have been, and are being, evolved.” Modern natural history collections and the scientists that care for and study them continue to be at the forefront of efforts to understand these endless forms as they continue to evolve.

Mortiz, C., J. L. Patton, C. J. Conroy, J. L. Parra, G. C. White, and S. R. Beissinger.  2008.  Impact of a century of climate change on Small-Mammal communities in Yosemite National Park, USA.  Science 322:261-264.

Pergams, O. R. W., W. M. Barnes, and D. Nyberg. 2003. Rapid change of mouse mitochondrial DNA. Nature 423:397.

John Bates
Curator and Section Head, Life Sciences

Contact Information

The tropics harbor the highest species diversity on the planet.  I am most intrigued by evolution at the tips of the tree of life.  My students and I study genetic structure in tropical birds and other organisms to address how this diversity evolved and how it continues to evolve as climates change and humans continue to alter landscapes.

We study comparative genetic structure and evolution primarily in the Afrotropics, the Neotropics, and the Asian tropics.  I am an ornithologist, but students working with me and my wife Shannon Hackett and other museum curators also have studied amphibians and small mammals (bats and rodents) and more recently internal, external and blood parasites (e.g., Lutz et al. 2015, Block et al. 2015, Patitucci et al. 2016).  Research in the our lab has involved gathering and interpreting genetic data in both phylogeographic and phylogenetic frameworks. Phylogenetic work on Neotropical birds has focused on rates of diversification and comparative biogeography (Tello and Bates 2007, Pantané et al 2009, Patel et al. 2011, Lutz et al. 2013, Dantas et al. 2015).  Phylogeographic work has sought to understand comparative patterns of divergence at level of population and species across different biomes (Bates et al 2003, Bates et al. 2004, Bowie et al. 2006, I. Caballero dissertation research, Block et al. 2015, Winger and Bates 2015, Lawson et al. 2015).  We also have used genetic data to better understand evolutionary patterns in relation to climate change across landscapes (e.g., Carnaval and Bates 2007) that include the Albertine Rift (through our MacArthur Grants, e.g., Voelker et al. 2010, Engel et al. 2014), the Eastern Arc Mountains (Lawson dissertation research, Lawson et al. 2015), the Philippines (T. Roberts and S. Weyandt dissertation research) and South America, particularly the Amazon (Savit dissertation research, Savit and Bates 2015, Figueiredo et al. 2013), and we are entering into the genomic realm focusing initially on Andean (Winger et al. 2015) and Amazonian birds (through our NSF Dimensions of Diversity grant). Shane DuBay is doing his dissertation research in the Himalayas on physiological plasticity in Tarsiger Bush Robins.  Nick Crouch, who I co-advise at U. Illinois, Chicago with Roberta Mason-Gamer, is studying specialization in birds from a modern phylogenetic perspective.  We seek to create a broader understanding of diversification in the tropics from a comparative biogeographic framework (Silva and Bates 2002, Kahindo et al, 2007, Bates et al. 2008, Antonelli et al. 2009).  João Capurucho (U. Illinois, Chicago, co-advised with Mary Ashley)  is studying phlylogeography of Amazonian white sand specialist birds and Natalia Piland (Committee on Evolutionary Biology, U. Chicago) is studying the impact of urbanization on Neotropical birds.  New graduate student Valentina Gomez Bahamon (U. Illinois, Chicago) is also working Boris Igic and me, after doing her Master Degree in her native Colombia on genomics and the evolution of migrating Fork-tailed Flycatchers (Tyrannus savana).  Jacob Cooper (Committee on Evolutionary Biology, U. Chicago) is studying the diversification of birds in Afromonte forests

Josh Engel and I are working up multi-species phylogeographic studies of birds across the Albertine Rift, based the Bird Division's long term research throughout the region.  We are working up similar data sets for Malawian birds.  Our current NSF Dimensions of Diversity grant on the assembly of the Amazonian biota and our NSF grant to survey birds and their parasites across the southern Amazon are generating genomic data for analysis in collaboration with paleoecologists, climatologists, geologists, and remote sensing experts from the U.S. and Brazil.  These large collaborative projects are providing new perspectives on the history of Amazonia.

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